PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000697636
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB
Protein Properties Length: 300aa    MW: 33084.7 Da    PI: 7.4471
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000697636genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.81.7e-101965548
                     -HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  5 TteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48
                     T+eEd +++  v + G+ +W++++++      +R++k+ck+rw ++l
    MDP0000697636 19 TAEEDAKILAHVSKXGPSNWTSVPKKTVftgVTRCGKSCKLRWTNHL 65
                     99******************************************996 PP

2Myb_DNA-binding48.52.1e-1573114346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      ++T+ E+el+v++++  G++ W tIa++++ gRt++++k++w++
    MDP0000697636  73 SFTPHEEELIVRLHATXGSR-WPTIAQHLP-GRTDNDVKNYWNT 114
                      79******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.9371065IPR017930Myb domain
SMARTSM007177.6E-71467IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.3E-171972IPR009057Homeodomain-like
CDDcd001671.78E-71965No hitNo description
PfamPF002493.2E-91965IPR001005SANT/Myb domain
SuperFamilySSF466892.52E-2419112IPR009057Homeodomain-like
PROSITE profilePS5129420.57566120IPR017930Myb domain
SMARTSM007175.6E-1470118IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-2273120IPR009057Homeodomain-like
CDDcd001671.97E-1173116No hitNo description
PfamPF002494.8E-1373114IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MVXPACGDKL HVKXGTLLTA EEDAKILAHV SKXGPSNWTS VPKKTVFTGV TRCGKSCKLR  60
WTNHLKSNLK HESFTPHEEE LIVRLHATXG SRWPTIAQHL PGRTDNDVKN YWNTKLKKKL  120
SEMGIDHVTH KPFSQILADY GNIGGVQKVG MRIGISSLNK DLRNAMXMKP AEPYSLPAQX  180
FSNINSHLMP ITMIPTKAEP ILDSFLGHTQ PGSQPPDLLT QLEAIXLVTE AFKSTESQSS  240
APNFYSHEGT LXSSSSTSSA TQEQATLQAF SWXDFLLEDA XMPIGDAQEH EXKAEYSSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-241912031128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008393090.10.0PREDICTED: transcription factor MYB39-like
TrEMBLM5WT281e-155M5WT28_PRUPE; Uncharacterized protein
STRINGPOPTR_0015s07900.11e-103(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29423474
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28470.13e-53MYB family protein